In Proceedings of the Third International ICWSM Conference. īastian M, Heymann S, Jacomy M (2009) Gephi: An open source software for exploring and manipulating networks. Īssunção IP, Nascimento LD, Ferreira MF et al (2011) Reaction of faba bean genotypes to Rhizoctonia solani and resistance stability. 60:1069–1086Īraujo FF, Bonifacio A, Bavaresco LG et al (2021) Bacillus subtilis changes the root architecture of soybean grown on nutrient-poor substrate. 26:32–46Īndueza-Noh RH, Martha L, Serrano-Serrano MI et al (2013) Multiple domestications of the Mesoamerican gene pool of lima bean ( Phaseolus lunatus L.): evidence from chloroplast DNA sequences. Īnderson MJ (2001) A new method for non parametric multivariate analysis of variance. Īguilar OM, Riva O, Peltzer E (2004) Analysis of Rhizobium etli and of its symbiosis with wild Phaseolus vulgaris supports coevolution in centers of host diversification. Ībdullaeva Y, Ratering S, Manirajan BA, Rosado-Porto D, Schnell S, Cardinale M (2022) Domestication impacts the wheat-associated microbiota and the rhizosphere colonization by seed- and soil-originated microbiomes, across different fields. Ībdullaeva Y, Manirajan BA, Honermeier B, Schnell S, Cardinale M (2021) Domestication affects the composition, diversity, and co-occurrence of the cereal seed microbiota. lunatus shaped rhizosphere microbial communities from taxonomic to a functional level, changing the abundance of specific microbial groups and decreasing the complexity of interactions among them.Ībdelfattah A, Tack AJM, Wasserman B et al (2021) Evidence for host–microbiome co‐evolution in apple. Together, our work showed that the domestication of P. The domestication process also affected the microbial community network, in which the complexity of connections decreased from wild to domesticated genotypes in the rhizosphere. Comparing the different genotypes, the analysis showed that Firmicutes ( Bacillus) was abundant in the rhizosphere of the wild genotypes, while Acidobacteria dominated semi-domesticated plants, and Proteobacteria (including rhizobia) was enriched in domesticated P. In general, the most abundant phyla were Actinobacteria (21.9%), Proteobacteria (20.7%), Acidobacteria (14%), and Firmicutes (9.7%). The community similarity decreased 57.67% from wild to domesticated genotypes. Our results showed that the microbial community’s structure was different from wild and semi-domesticated as compared to domesticated genotypes. In general, rhizosphere communities were more diverse than bulk soil, but no differences were found among genotypes. Here, we used 16S rRNA gene sequencing to assess the microbial community in the bulk soil and rhizosphere of wild, semi-domesticated, and domesticated genotypes of lima bean ( Phaseolus lunatus), to investigate the effect of plant domestication on microbial community assembly. However, plant domestication reduces genetic diversity, changes plant physiology, and could have an impact on the associated microbiome assembly. Plants modulate the soil microbiota and select a specific microbial community in the rhizosphere.
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